The results with dissociated CA1 neurons predict minimal engageme

The results with dissociated CA1 neurons predict minimal engagement of either persistent or transient components of sodium current FG-4592 purchase at voltages negative to −80mV and increasing engagement at more depolarized voltages in the range from −70mV to −60mV. To test the dependence

of uncaging-evoked EPSPs (uEPSPs) on membrane potential in this range, the resting potential of the neuron was adjusted to different voltages in each experiment using direct current from the amplifier. Figure 6A shows the mean ± SEM of uEPSPs from spines recorded in control solutions from holding potentials of −83mV (light gray), −73mV (gray), and −63mV (black). The peak voltage change of the uEPSP evoked by stimulation of a single spine was ∼1mV when the membrane potential was −83mV, and the peak uEPSP increased Ibrutinib progressively when the holding potential was depolarized to −73mV or −63mV, with a ∼20% enhancement when elicited from −63mV (Figure 6B). The enhancement at −63mV compared

to −83mV was statistically significant (p = 0.024, paired t test, n = 18). Consistent with originating by engagement of voltage-dependent sodium current, this effect was absent when the same experiment was performed in the presence of TTX (Figures 6C and 6D; p = 0.91, n = 21, paired t test comparing −63mV and −83mV). As expected from this comparison, the size of the uEPSP was significantly smaller in TTX than control when elicited from −63mV (p = 0.04, unpaired t test) but not when elicited from −83mV (p = 0.63, unpaired t test). The effect of TTX to reduce EPSPs evoked in spines of CA1 neurons is similar to previous results seen with stimulation of spines in neocortical pyramidal neurons (Araya et al., 2007). Do the components of subthreshold transient and steady-state sodium current come from the same channels that carry suprathreshold transient current? To explore

whether this is likely in principle, we tested the prediction of kinetic models for sodium channel gating. Figure 7A shows a Markov model for sodium channel gating based on previous models formulated to match experimental measurements of suprathreshold transient sodium current (Kuo and Bean, 1994) or both persistent and transient current (Taddese and Bean, 2002; Milescu et al., 2010) in other types of central neurons. The rate constants Mannose-binding protein-associated serine protease were adjusted so that the predicted suprathreshold transient current (Figure 7B) matched the voltage dependence and kinetics of current recorded in CA1 neurons under our experimental conditions. The model predicted a midpoint of activation of transient current of −36mV and a midpoint of inactivation of −65mV (Figure 7C), corresponding to typical experimental values. We found that the model predicts both subthreshold steady-state and subthreshold transient current, with kinetics and voltage dependence similar to the experimentally measured currents. The model predicts steady-state conductance with a midpoint of −63mV and a slope factor of 3.

, 2006, Cunningham et al , 2003 and Mallucci et al , 2007) Our r

, 2006, Cunningham et al., 2003 and Mallucci et al., 2007). Our results indicate that defective glutamate release in the cerebellum of Tg(PG14) mice is due to inefficient VGCC function in CGNs, and that mutant PrP is directly responsible. Lentivirus-mediated knockdown of PG14 PrP restored the depolarization-evoked calcium rise, and transfection

of a plasmid encoding PG14 PrP impaired the calcium response in DAPT molecular weight wild-type neurons. The latter observation indicates that PG14 PrP alters calcium dynamics with a dominant effect over wild-type PrP, consistent with a gain-of-toxicity mechanism. However, a loss of a putative PrP function in governing VGCC activity (see below) may also be involved. Previous analyses suggested that accumulation of mutant PrP in the secretory pathway might be critical in neuronal find more dysfunction, possibly due to interference with transport and delivery of essential cargo molecules to synapses (Dossena et al., 2008, Massignan et al., 2010 and Medrano et al., 2008). Here, we found that intracellular retention of mutant PrP was required for perturbing neuronal calcium

dynamics, and identified the α2δ-1 subunit of VGCCs as a target molecule. We documented a physical interaction between PrP and α2δ-1 by coimmunoprecipitation, and the two proteins colocalized in transfected cells, consistent with analysis of the native PrP interactome, which identified α2δ subunits

as candidate PrP interactors (Rutishauser et al., 2009). The α2δ subunits play a vital role in intracellular trafficking of the pore-forming CaVα1 subunits of the CaV1 and CaV2 classes, and boost calcium current amplitude by increasing the number of channels on the cell surface (Cantí et al., 2005). α2δ interacts with CaVα1 during biosynthetic maturation, and promotes the transport of the heteromeric channel complex to correct presynaptic sites (Bauer et al., 2010, Cantí et al., 2005, Hendrich et al., Tryptophan synthase 2008 and Saheki and Bargmann, 2009). We found that α2δ-1 and CaVα1A were weakly expressed on the cell surface and localized mainly in the ER and Golgi in mutant PrP-expressing cells, suggesting impaired secretory transport. We also found smaller amounts of α2δ-1 and CaVα1A in cerebellar synaptosomal fractions of Tg(PG14) mice, and reduced colocalization with synaptic markers, consistent with inefficient targeting of the channel complex to axonal terminals of granule neurons. Thus, the smaller depolarization-evoked calcium rise in cerebellar synaptosomes and in primary CGNs can be explained by the fact that there are fewer functional channels on the plasma membrane.

We will see that the involvement of neuromodulation in computatio

We will see that the involvement of neuromodulation in computations to do with VX-770 datasheet utility illuminates all these issues and also highlights a number of other general properties. One important complexity about utility is the parallel involvement of two different instrumental systems and also Pavlovian influences. These systems are subject to neuromodulation in partially different ways, and so are discussed individually below. The goal-directed, or model-based, instrumental system (Dickinson and Balleine, 2002), which involves frontal regions and the dorsomedial striatum

(Balleine, 2005; Valentin et al., 2007), is believed to construct a model of the task and to use that model prospectively to predict selleck outcomes consequent on choices (Tolman, 1948). One central mark of goal-directed control is its sensitivity to motivational state—predicted outcomes are evaluated under current (or possibly predicted; Raby et al., 2007) motivational states. The second instrumental control system is habitual, or model free (Dickinson and Balleine, 2002), and is more closely associated with a different set of regions that includes the dorsolateral striatum (Balleine, 2005;

Tricomi et al., 2009). This learns what to do from direct experience of past actions and reward and so plans retrospectively (Thorndike, 1911). That planning is retrospective implies that it is the motivational state that pertained during learning that is important, and so model-free actions may be inappropriate for the current motivational state. Finally, for instrumental systems, choices are ultimately contingent on the delivery of suitable outcomes. Conversely, under Pavlovian control, elicitation of preparatory and consummatory actions associated with predictions of,

or the actual presence of, biologically significant reinforcers, appears to be automatic. Evidence for this is that the actions are still elicited even if they have deleterious consequences in terms of actually getting or preventing good or bad outcomes (Williams and Williams, 1969; Hershberger, 1986; Dayan et al., 2006). One interpretation is that Pavlovian actions are the result of evolutionary preprogramming, providing heuristic choices that are typically, though not always, appropriate. The predictions underlying Astemizole Pavlovian control may be made in model-based or model-free ways. Appetitive and aversive utilities act in rather distinct ways, a fact that is better understood for model-free control. Thus, reward and punishment are considered separately in the latter. Dopamine is a key ascending neuromodulator. There is ample evidence that the phasic activity of DA neurons and the phasic release of DA in macaques (Bayer and Glimcher, 2005; Schultz et al., 1997; Morris et al., 2006; Satoh et al., 2003; Nakahara et al., 2004), rodents (Hyland et al., 2002; Roesch et al.

, 1990, McCabe et al , 2004 and Zvolensky et al , 2003b) than in

, 1990, McCabe et al., 2004 and Zvolensky et al., 2003b) than in the general population. Smoking prevalence is higher among severely depressed than among mildly and moderately depressed patients (Tanskanen et al., 1999). These associations of smoking with depressive/anxiety disorders remain even after controlling for potential confounders such as socio-demographic variables, substance use/dependence, increased work hours, social isolation, neuroticism, novelty seeking, childhood conduct problems and childhood

abuse, adverse life events, parental smoking history, deviant peers, family instability and anxiety disorders (Almeida and Pfaff, 2005, Duncan and Rees, 2005, Fergusson et al., 2003, Lee Ridner et al., 2005, Patton et al., 1996, Scott et al., 2009 and Wiesbeck et al., 2008). The direction of causality of smoking-psychopathology association has not yet been fully understood (Dierker et al.,

2002). Longitudinal studies Osimertinib have attempted to explain the mechanisms of the association by charting the timeline of smoking behavior and depression/anxiety disorders. Several studies have demonstrated that depressive and anxiety disorders (Breslau et al., 2004b, Fergusson et al., 2003 and Sihvola et al., 2008) and symptoms (McKenzie et al., 2010, Patton et al., 1998, Prinstein and La Greca, 2009 and Repetto et al., 2005), and social fears and social phobia (Sonntag et al., 2000) increase the likelihood of starting smoking and progression to nicotine dependence (Fergusson et al., 2003). These results lead to the assumption that smoking may serve PI3K inhibitor as self-medication to ameliorate negative symptoms (Murphy et al., 2003). Other studies have found that smoking is a vulnerability factor in the development of depression/anxiety disorders (Breslau et al., 2004a, Duncan and Rees, 2005, John et al., 2004, Klungsoyr et al., 2006, Pasco et al., 2008, Rodriguez et al., 2005 and Steuber and Danner, 2006). Furthermore, nicotine-dependent

smokers have more severe depressive and anxiety symptoms than non-dependent smokers in a 13-year longitudinal study (Pedersen and von Soest, 2009). Thus, these data lead to the assumption that smoking has a predictive role mafosfamide in the onset or increasing severity of these disorders (Steuber and Danner, 2006). Several longitudinal studies have found evidence for a bidirectional smoking-depression/anxiety relationship (Audrain-McGovern et al., 2009, Breslau et al., 1993, Breslau and Klein, 1999, Brown et al., 1996, Cuijpers et al., 2007, Goodman and Capitman, 2000, Isensee et al., 2003, Johnson et al., 2000, Kang and Lee, 2010, Munafo et al., 2008, Pedersen and von Soest, 2009 and Windle and Windle, 2001) in which the two conditions mutually influence each other. Finally, these co-occuring conditions may also be explained partly by common environmental (McCaffery et al., 2003 and Reichborn-Kjennerud et al., 2004) and genetic factors (Kendler and Gardner, 2001, Kendler et al., 1993, Korhonen et al., 2007 and Lyons et al.

When stimulation is distributed over all available bipolar cells,

When stimulation is distributed over all available bipolar cells, but locally weaker, suppression is less effective and gain stays high. Furthermore, this local gain control can be viewed as a dynamic process; it affects the later part of the spike burst, but not its initial phase, which determines the first-spike latency. In the following, we test neuronal mechanisms that may implement such a dynamic local gain control mechanism. A first candidate mechanism for local gain control in

homogeneity detectors is synaptic depression at bipolar cell terminals. Indeed, bipolar cell signals can display substantial depression (Burrone and Lagnado, 5-FU manufacturer 2000 and Singer and Diamond, 2006), which could partly

suppress responses to strong local activation. When activation is distributed over more bipolar cells, on the other hand, as in the case of homogeneous receptive field activation, synaptic depression is likely to be less effective and thus should permit longer spike bursts. We therefore tested whether homogeneity detectors are cells with particularly strong local adaptation, as would result from synaptic depression. To do so, we used a stimulus that aimed at predepressing synapses in one half of the receptive field. We assessed the effect of this predepression on the iso-rate curves by a brief activation of one receptive field half shortly before each stimulus of the iso-rate-curve selleck products measurement (Figure 6A). As expected, the predepression stimulus reduced sensitivity of the ganglion cells, which is reflected by the increased radius of the iso-rate curves

(Figures 6B and 6C) as compared to the control condition without the predepression stimulus. The reduction in sensitivity may GPX6 contain both global and local components; a symmetric scaling of the predepressed iso-rate-curve radius along all directions reflects a global loss in sensitivity, whereas an asymmetric scaling provides evidence for a local loss in sensitivity and thus a local adaptation mechanism. If the nonconvex iso-rate curves of the homogeneity detectors were to result from particularly strong synaptic depression, this asymmetric scaling should be particularly strong for these cells. However, this was not supported by the experimental data. In fact, homogeneity detectors typically displayed rather global adaptation effects and less local sensitivity loss (Figure 6C) than cells with a convex iso-rate curve (Figure 6B). Synaptic depression is thus not a plausible mechanism for the particular features of homogeneity detectors. As an alternative model, we explored whether local inhibitory signaling could mediate a local gain control.

These swimming pattern changes were accompanied by a decrease in

These swimming pattern changes were accompanied by a decrease in the latency of avoidance and an increase in the accuracy of the response, that is, the percentage of avoidance response (Figures 1E and 1F). We prepared three types of control fish: cue-alone group fish that were given cue alone, shock-alone group fish XAV939 that were given electric shock alone, and cue-shock unpaired group fish that were given independent cue or electric shock at random. We checked the behavioral responses against cue presentation in the cue-alone group and in the cue-shock unpaired group. We confirmed that the rate of avoidance response in these groups was less than a chance level after three sessions,

showing no learning by the cue if it is not associated with the electric shock (Figures 1G and 1H and Movie S1). At 24 hr after the last training session, the learner fish were immobilized by injecting the muscle relaxant d-tubocurarine and then placed in the hand-made chamber of a large-field imaging system equipped with a perfusion tube and a red LED light positioned to the right eye ( Figures

S2A and S2C). The decrease in fluorescence intensity of IP was used as a reporter of neural activity ( Li et al., 2005). We measured fluorescence changes in HuC:IP fish in response to the cue presentation. As a control, we measured fluorescence changes of cue-alone fish trained as described above (see also full experimental procedures in the Supplemental Experimental Procedures). Data for the temporal fluorescence changes were converted to absolute values for clear selleck kinase inhibitor presentation. In both learner and cue-alone control fish, an intense activity spot was Linifanib (ABT-869) observed in the contralateral optic tectum upon cue presentation ( Figure 2A, star in all left panels, and Movies S3 and S4), reflecting activation of afferents from the right retina. Interestingly, only learner fish showed bilateral spot-like activities

in the dorsal telencephalon 24 hr after the last training, and activity was stronger in the contralateral left hemisphere than in the ipsilateral right hemisphere ( Figure 2A, arrows in the fourth row of the left panel, and Movie S4). We then examined the specificity of this telencephalic calcium signal by observing two other control conditions, shock-alone and cue-shock unpaired (see Experimental Procedures). No localized calcium signals were observed in both cases ( Figure 2A, second and third rows of the left panel). Interestingly, when the learner was analyzed for its activity 30 min after the last training session, no focal activity was observed in response to cue presentation in the telencephalon ( Figure 2A, fifth row of the left panel, and Movie S5). These results suggest that the activity observed at 24 hr was specific to the retrieval of the behavioral program from long-term storage.

Binary systems consist

of a transactivator that specifica

Binary systems consist

of a transactivator that specifically binds to a DAPT DNA binding site resulting in the transcriptional activation of a downstream responder (Figure 1A). Repressors of the transactivator and compounds that activate or inactivate the transactivator or the repressor allow temporal or spatial control of gene expression. GAL4 was the first binary system developed for use in Drosophila. The GAL4 transactivator binds Upstream Activating Sequences (UAS) to initiate transcription of downstream responders ( Fischer et al., 1988 and Brand and Perrimon, 1993) ( Figure 1B). GAL4 activity can be inhibited by the GAL80 repressor ( Lee and Luo, 1999). The GAL4 system is extremely reliable and useful ( Duffy, 2002) and recent improvements have increased expression levels and uniformity significantly ( Pfeiffer et al., 2010). The regulatory elements that dictate GAL4 expression simultaneously determine both temporal and spatial control. The spatial expression patterns can be restricted by

several positive and negative intersectional techniques. The most widely used mechanism for achieving temporal control of GAL4 expression utilizes a temperature-sensitive GAL80 repressor (Figure 1B) (McGuire et al., 2003). An alternative strategy uses GAL4 variants that rely on various drugs for activation (Figure 1C) (Han et al., 2000, Osterwalder et al., 2001 and Roman et al., 2001). While GAL4 activation in response to drugs is slow, this approach can be used to bypass GAL4 expression during development. GAL4 expression levels and activity are increased at 28°C and reduced at 18°C, perhaps due to heat shock elements present in the Selleckchem Luminespib promoter (Mondal et al., 2007). A temperature-sensitive (ts) version of GAL4 was developed to allow overexpression only at the permissive

temperature (Mondal et al., 2007). Efficacy of GAL4 was improved by codon optimization, messenger RNA stabilization, and substitution of higher-activity transcriptional activating domains (Pfeiffer et al., 2010). Extremely high levels of GAL4 can be toxic in some cells (Kramer and Staveley, 2003, Rezával et al., 2007 and Pfeiffer et al., 2010), and optimal levels have been established. Expression levels of the responder were increased by varying the number of UAS sites and adding posttranscriptional regulatory elements; Thymidine kinase finally, a specific polyadenylation signal and the inclusion of an intron and posttranscriptional regulatory element enhanced GAL80 suppression of GAL4 significantly (Pfeiffer et al., 2010). A different binary system is based on the LexA transactivator (Figures 1D and 1E). Fusion of the DNA binding domain of LexA to the transcription activation domain of the viral protein VP16 results in a potent GAL80-insensitive transactivator that can bind to LexA operator (LexOp) sites and drive expression of responder elements (Szüts and Bienz, 2000 and Lai and Lee, 2006) (Figure 1D).

, 2000) and to occur outside of synapses (Bogdanov et al , 2006),

, 2000) and to occur outside of synapses (Bogdanov et al., 2006), we used a fluorescent receptor internalization assay after labeling of surface GABAAR α1 in living neurons. In this assay internalized receptors (red signals) appeared

in a punctate putative vesicular fraction within the cytoplasm, while remaining surface receptors stained green (Figure 4A). Neurons from muskelin KOs displayed significantly decreased GABAAR α1 internalization rates in both somata PLX3397 and neurite processes (Figure 4B), indicating that muskelin is critical for GABAAR endocytosis. Quantitative line-scan analysis detected reduced internal fluorescent intensities in −/− cells (red channel), whereas intensities of surface GABAAR α1 (green channels) showed larger peaks at border areas of KO neurons, representing the plasma membrane (Figures 4C and 4D; compare with Figures 3A–3D). An independent assay based on receptor surface biotinylation (Kittler et al., 2004) revealed approximately 50% reduced GABAAR α1 levels over 720 min, as compared to a loading control (Figures mTOR inhibitor therapy 4E and 4F). This decrease was prevented in the presence of the F-actin polymerization inhibitor cytochalasin D (Figures 4E and

4F), indicating that an intact F-actin cytoskeleton is a prerequisite for removal of GABAAR α1 from the neuronal surface. We therefore asked whether the retrograde-directed F-actin motor myosin VI, important in AMPA-type glutamate receptor internalization (Osterweil et al., 2005), might be part of a GABAAR α1-muskelin complex and whether before its function might be required for GABAAR α1 internalization. Notably, precipitation with a muskelin-specific antibody led to co-IP of myosin VI from wild-type (+/+), but not from muskelin KO-derived (−/−) brain lysate (Figure 4G). Furthermore, the use of either a myosin VI-specific or a GABAAR α1-specific antibody led to co-IP of myosin VI, muskelin, or GABAAR α1, respectively (Figures 4H and 4I). The three binding partners also cofractionated at similar molarities during sucrose gradient centrifugation, both in the presence and absence of detergent (Figures S2A and S2B). However, GABAAR α1-myosin

VI interactions remained in the absence of muskelin (Figures S2C and S2D) and the muskelin-myosin VI association seems unlikely to be direct (Figures S2E and S2F), suggesting a larger GABAAR α1-muskelin-myosin VI complex that may also involve other trafficking factors (Figure S2G). Within this complex muskelin might share regulatory functions (Figures S2H and S2I), rather than physically bridging a GABAAR α1-myosin VI interaction. In order to assess a possible functional significance of these physical interactions, we aimed to interfere with F-actin-based myosin VI functions. To this end, we coexpressed GABAAR α1 and GABAAR β3 in the presence or absence of a dominant-negative myosin VI mutant (Osterweil et al., 2005) in HEK293 cells.

,

, Selleckchem BAY 73-4506 2006). We conducted the miRNA arrays with a total of 785 probe sets to compare the expression

of miRNAs in the forebrain of EPAC−/− mice with the control littermates. Combined with qPCR analysis we found a number of brain-enriched miRNAs that were significantly altered in EPAC−/− mice (Figures 4A and 4B, n = 12 assays/6 mice/group); three were massively upregulated whereas three were downregulated (Figure 4A and 4B, n = 12 assays/6 mice/group). Of these miRNAs, miR-124 is of particularly interest because of its ability to coordinate synaptic functions in memory consolidation (Rajasethupathy et al., 2009, Fischbach and Carew, 2009 and Arvanitis et al., 2010). miR-124 binds to a complementary find more sequence (GUGCCU) in the mRNA 3′-untranslated region (3′UTR) and facilitates the mRNA degradation (Lim et al., 2005). To search for the specific mRNA targets of miR-124 in EPAC−/− mice, we carried out a genome-wide gene expression analysis with 36,422 probe sets (Figure S2). We identified 11 genes that were significantly altered in EPAC−/− mice (Figure 4C, also see Figure S2). The most notable gene was Zif268, also known as Egr1; it was dramatically downregulated ( Figures 4C–4F,

n = 12 assays/6 mice per group). Zif268 encodes a zinc finger transcription factor essential for stabilizing synaptic plasticity and spatial learning ( Hall et al., 2000, Jones et al., 2001, Bozon et al., 2003, much Baumgärtel et al., 2008 and Renaudineau et al., 2009). Since Zif268 contains a miR-124 conserved binding site in its 3′UTR region ( Figure 4G), we hypothesize that miR-124 binds directly to and inhibits Zif268 mRNA translation. To test this hypothesis, we created a wild-type 3′UTR segment and its mutant of Zif268 and placed these segments into the luciferase reporter system. When coexpressed with miR-124, a wild-type reporter showed significant inhibition ( Figure 4H, n = 4), compared to its mutant, demonstrating that miR-124 directly targets to Zif268. To directly determine whether miR-124 inhibition of Zif268 mediates the EPAC−/− phenotypes,

we created a saline-formulated, locked-nucleic acid-modified (LNA) antisense oligonucleotide (LNA-miR-124). As a control, we used LNA-negative (LNA-control, or control). We injected 3 μl of LNA-miR-124 (50 mg/ml) or LNA-control directly into the third ventricle of adult mice. Forty-eight hours after the injection, real-time PCR was used to analyze miR-124. We found that LNA-miR-124 induced a stable silencing of miR-124 in the hippocampus and the prefrontal cortex, whereas LNA-control did not (Figure 4I, n = 6 assays/3 mice). Following inhibition of endogenous miR-124, Zif268 mRNA (Figure 4J, n = 6 assays/3 mice), and protein (Figures 4K and 4L, n = 6 assays/3 mice) in EPAC−/− mice were elevated to a level comparable with that in EPAC+/+ mice.

, 2006 and Raichle et al ,

, 2006 and Raichle et al., RG7204 clinical trial 2001). Until the study of spontaneous BOLD activity, however, the association

of regions within a functional system was to some extent dependent upon sets of task paradigms. Task-based approaches left functional systems open to an interpretation that rather than being a fundamentally related group of brain regions within a brain-wide context, a functional system thus defined might be just a transient and task-specific association of brain regions. The subgraphs presented herein were derived in task-free data using methods with no prior information about node identity. There is substantial agreement between aspects of paradigm-driven functional system definition in neuroimaging, and paradigm-free subgraphs derived in task-free activity. Even if one were to object that the areal network included functional

assumptions via meta-analytic localizers, the modified voxelwise analysis, which returned very similar results, made no such assumptions. In a brain-wide context, several functional systems are distinguished from each other by spontaneous activity. This task-free definition of brain functional organization can inform perspectives on cognitive function. For example, dorsal E7080 nmr and lateral frontal cortex appears to be apportioned among a variety of distributed subgraphs, many of which correspond to functional systems with known characteristics (Figure 2). This organization does not appear consistent with accounts of cognition that posit rostro-caudal gradients or hierarchies across frontal cortex (Badre and D’Esposito, 2009 and O’Reilly, 2010). In a related manner, the finding Mannose-binding protein-associated serine protease of similar graph properties (relatively dense internal relationships and relatively few external relationships) in visual, SSM, and default mode systems may inform the degree to which the default mode system is seen as a processing type of system versus a control type of system. Such a finding need not contradict the description of posterior members of the default mode

system as cortical hubs (Buckner et al., 2009), but it may alter the understanding of what it means to be a hub. Recent investigations into the structure of functional brain organization using a variety of methods (Erhardt et al., 2010 and Yeo et al., 2011) have found some similar (but not identical) sets of resting state networks as the subgraphs reported here. We consider convergence across methods to be a key indicator of the validity of findings. We find the graph theoretic framework to be especially useful, because it is capable of describing the overall graph (no such measures are presented in this article, but small-world measures are an example), portions of the system (e.g., subgraphs), or individual nodes of the system (e.g., local efficiency) within a common framework. Our findings have substantial implications for past and future graph-based analyses.