However, it should be noted that the host range of ranaviruses is incompletely understood at this time. The host immune system has evolved multiple ways to fight virus infection and replication. One important arm of the host immune response is the innate immune system, which recognizes molecular patterns present in many pathogens and initiates antimicrobial responses [13, 14]. An important

component of ZD1839 concentration the host response is the antiviral protein kinase PKR, which contains double-stranded (ds) RNA binding domains (RBD) and a kinase domain. PKR is activated by dsRNA, which is formed during infection by many RNA and DNA viruses, and phosphorylates the α subunit of eukaryotic translation initiation factor 2 (reviewed in [15]). PKR is inactive in its latent monomeric form. However, upon binding dsRNA, two PKR molecules

dimerize and undergo autophosphorylation on residue Thr446 (for human PKR) [16–18]. Activated PKR then phosphorylates eIF2α on Ser51, which subsequently acts as an inhibitor of the guanine nucleotide exchange factor eIF2B. As eIF2B normally exchanges GDP for GTP on eIF2, a step necessary for successful translation initiation, eIF2α phosphorylation leads to a general inhibition of translation initiation [19, 20]. The function of mammalian PKR and its interaction with viruses has been extensively characterized (reviewed in [15]). However, PKR-like molecules in ectotherms eluded molecular characterization until recently. PKR-like activity from was first described in fish cells [21, 22]. This was followed by the cloning and functional buy Pembrolizumab characterization of crucian carp and zebrafish PKR-related genes, which contain Z-DNA binding (Zα) domains instead of the dsRBDs and were hence named PKZ [23, 24]. PKZ was subsequently described in Atlantic salmon and the rare minnow [25, 26]. Recently, authentic PKR genes were described and characterized in many ectotherm species including zebrafish, pufferfish, Japanese flounder and two Xenopus species [27, 28]. Like mammalian PKR, both PKZ and PKR are induced by immunostimulation [23, 27,

28]. Phylogenetic analyses indicate that a duplication of an ancestral PKR-like gene in the fish lineage probably led to the emergence of PKR and PKZ in a fish ancestor, and might have helped to extend the spectrum of viral nucleic acids that can be recognized [27]. Although higher vertebrates lack PKZ genes, they contain a different Zα-containing protein, termed ZBP1, which binds Z-DNA and has been implicated in the recognition of viral DNA and the induction of an antiviral response [29–31]. In order to overcome the antiviral effects of PKR many mammalian viruses encode inhibitors of PKR, which block PKR activation or activity at different steps during or following the activation process (reviewed in [32]).

C-HP performed the XPS spectra measurement. Y-TS conducted the FTIR spectra measurement. Y-ES performed the Raman spectra measurement. SMS assisted in the data analysis. All authors read and approved the final manuscript.”
“Background A clever trick by product designers is self-unfolding structures such as collapsible

laundry hampers and  pop-up’ tents. These ingenious designs involve a continuous ring structure that  unfolds’ to a larger configuration. Similar mechanisms have been proposed for systems ranging from stretchable electronics [1] to polymer membranes [2, 3] and hollow shell structures [4]. Here, we focus on the smallest possible unfolding system – a closed chain of carbon atoms KU-57788 nmr – to investigate the limits of stability at the

atomistic scale. Insights from such structures can then be applied to more complex macromolecular systems, such as responsive polymer [5, 6] or protein-based materials [7–10]. A simple molecular system capable of folding into a simple ring structure while maintaining atomistic fidelity and behavior is desired. As such, a model system is constructed using carbyne – a one-dimensional carbon allotrope consisting of either a cumulative double-bond structure (cumulene) or alternating single and triple bonds (polyyne) [11, 12]; the polyyne structure is depicted in Figure 1a. This 1D carbon structure has caused recent interest due to its novel electron transport and the prospect of being components in atomistic scale circuits [13, 14], as well as recent synthesis of long chains [15–19]. Previous learn more first-principle- Rapamycin datasheet and molecular dynamics (MD)-based studies [20–23] have characterized molecular mechanics (e.g., zero or near-zero temperatures) properties of isolated carbyne chains (e.g., in a vacuum). Considered here is a system of isolated closed-loop carbyne (Figure 1b) to explore the stability of a folded three-loop geometry (Figure 1c). Figure

1 Three-loop carbyne model and simulation. (a) Molecular structure of carbyne, a one-dimensional carbon allotrope composed of sp-hybridized carbon atoms, consisting of alternating single-triple bonds. While chains of carbyne can be experimentally synthesized, they typically require heavy end-groups for stability [12, 19]. (b) A theoretical carbyne  loop’, circumventing the need for stabilizing end-groups by bonding the carbyne chain to itself. (c) Example molecular model of a folded carbyne loop in a stable three-ring configuration, with imposed overcurvature of three [68], similar to self-unfolding laundry hampers. In simplest terms, additional elastic strain energy due to curvature triggers unfolding from the three-loop configuration. However, to completely unfold from an initial coiled state at the molecular scale, both torsional and self-adhesive energetic barriers must be overcome, resulting in a range of stable conditions, depending on initial curvature (κ) and temperature (T).

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Gastrointestinal cancer. Best Pract Res Clin Gastroenterol 2004, 18:323–336.CrossRefPubMed 35. Björkstén B, Sepp E, Julge K, Voor T, Mikelsaar M: Allergy development and the intestinal microflora during the first year of life. J Allergy Clin Immunol 2001, 108:516–520.CrossRefPubMed 36. Yatsunenko T, Rey FE, Temozolomide cell line Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI: Human gut microbiome viewed across age and geography. Nature 2012, 486:222–227.PubMed 37. Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO: Development of the human infant intestinal microbiota. PLoS Biol 2007, 5:e177.CrossRefPubMed 38. Agans R, Rigsbee L, Kenche H, Michail S, Khamis HJ, Paliy O: Distal gut microbiota of adolescent children is different from that of adults. FEMS Microbiol Ecol 2011, 77:404–412.CrossRefPubMed 39. Eggesbø M, Moen B, Peddada S, Baird D, Rugtveit J, Midtvedt T, Bushel PR, Sekelja M, Rudi K: Development of gut microbiota in infants not exposed to medical interventions. APMIS 2011, 119:17–35.CrossRefPubMed 40. Brandt Erlotinib supplier K, Taddei CR, Takagi EH, Oliveira FF, Duarte RT, Irino I, Martinez MB, Carneiro-Sampaio M: Establishment of the bacterial fecal community

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Therefore, the purpose of this study is to verify the effects of Cr supplementation and intense resistance training on muscle strength and selleck compound oxidative stress of athletes. Methods Subjects Twenty-six male handball athletes (17.10 ± 1.63 years; ranging from 15 to 19 years old) from Sorocaba, SP, Brazil participated in this experiment. Exclusion criteria were: i) no previous experience in resistance training, ii) current use of any nutritional supplement, iii) current or previous intake of anabolic androgenic steroids, iv) current or previous intake of Cr and maltodextrin for supplemental purposes,

and v) pre-existing abnormalities revealed in laboratory tests or medical exam at the beginning of experimental analysis. All experimental procedures were

performed OTX015 in accordance with the Helsinki Declaration and the guidelines established by the Brazilian National Committee of Research on Human Subjects. The Catholic University Human Subjects Ethics Committee approved all experimental procedures. All subjects provided written consent prior to participating in this study according to the Brazilian Ministry of Health/National Health Foundation. Experimental procedures A randomized, double-blind, placebo-controlled study with subjects divided into 3 groups: GC (N = 9) Cr monohydrate supplemented, GP (N = 9), a placebo group that consumed maltodextrin [16], and COT (N = 8), a group of athletes who did not receive Cr or placebo. All individuals (GC, GP, and COT) underwent a 32-day resistance Roflumilast training program that began and finished concomitantly with Cr and Placebo supplementation. One day prior to Cr/Placebo supplementation and resistance training, and one day

following completion of Cr/Placebo supplementation and resistance training, a blood sample from the cubital vein was drawn for verification of oxidative stress parameters, body composition was assessed, and muscle strength and endurance tests were applied to all athletes. All athletes were examined by a sports medicine doctor before, during, and after completion of study. No abnormalities were found in subjects’ health condition at any time during the survey. The protocol used for clinical examination was carried out in accordance with the recommendations from the International Olympic Committee. Moreover, subjects were asked weekly about the occurrence of the following symptoms: increased thirst, fatigue, frequent headaches, frequent irritability, tinnitus, numbness in the head, neck, back, or limbs, shivering and chills, nausea, diarrhea, stomach discomfort, cramps, and dizziness. All athletes had frequent consultations with the team’s physician about the occurrence of muscle or joint injuries or other clinical conditions.

There is therefore an increasing interest on the role of drug intervention to reduce the risk of NVFs [16] and subsequent mortality [17]. To our knowledge, this is the first study analysing all consecutive patients older than 50 years of age presenting with a NVF during a 5-year follow-up. The aim of the present study was to

determine the 5-year absolute risk (AR) of subsequent NVF and mortality after a NVF. Materials and methods Recruitment of patients In this retrospective study, the hospital database code (International Classification of Disease, ICD-9) for fractures was used to recruit patients. All fractures reported in the patients’ selleck kinase inhibitor medical files were radiographically confirmed. Only subsequent fractures that are reported in the same hospital database were used for the follow-up analyses. Whether patients were deceased during follow-up was confirmed using the national obituary database. Inclusion criteria for this study were the following: (1) age ≥50 years, (2) a recent NVF between January 1999 and December 2001 and (3) living in the postal code area of Maastricht. Patients were excluded if they had sustained a pathological fracture. Vertebral fractures were not taken into consideration. The ICD-9 was used

to classify clinical fractures into 15 categories: skull, vertebra, clavicle, thorax, pelvis, humerus, forearm, wrist, hand, hip, femur, patella, tibia/fibula, ankle or foot. These fractures were further analysed according to fracture location (humerus, wrist and hip) and grouping of several locations: Ganetespib datasheet other, multiple simultaneous fractures belonging nearly to the six main NVFs (wrist, leg, humerus, hip, pelvis or clavicle) or not [16] and into major fractures (hip, pelvis, proximal tibia or humerus, multiple ribs and distal femur) and minor fractures (all other fractures)

[18]. All groups are mutually exclusive and included all patients. Available potential risk factors for subsequent fracture and mortality included age, sex and baseline fracture locations [6, 15]. In this paper, we only showed the Kaplan–Meier and Cox regression analyses with major vs. minor fractures as baseline fracture location. To create Table 1, we used the other classifications as mentioned above. Table 1 Patients according to baseline fracture location Baseline fracture location Men, N = 488 (%) Women, N = 1,433 (%) All N = 1,921 (%) Humerus 38 (7.8) 184 (12.8) 222 (11.6) Wrist 69 (14.1) 433 (30.2) 502 (26.1) Hip 115 (23.6) 354 (24.7) 469 (24.4) Other 203 (41.6) 358 (25.0) 561 (29.2) Multiple 63 (12.9) 104 (7.3) 167 (8.7) 6 main NVFs 341 (69.9) 1,211 (84.5) 1,552 (80.8) No main NVFs 147 (30.1) 222 (15.5) 369 (19.2) Major 214 (43.9) 651 (45.4) 865 (45.0) Minor 274 (56.1) 782 (54.6) 1,056 (55.

J Phys Chem Lett 2010, 1:2867–2875.CrossRef 31. Personick ML, Langille MR, Zhang J, Mirkin CA: Shape control of gold nanoparticles by silver

underpotential deposition. Nano Lett 2011, 11:3394–3398.CrossRef 32. Jathesh K, George Thomas K: Surface-enhanced Raman spectroscopy: investigations at the nanorod edges and dimer junctions. J Phys Chem Lett 2011, 2:610–615.CrossRef 33. Xia X, Yang M, Wang Y, Zheng Y, Li Q, Chen J, Xia Y: Quantifying the coverage density of poly(ethylene glycol) chains on the surface of gold nanostructures. ACS Nano 2012, 6:512–522.CrossRef 34. Wang D, Nap RJ, Lagzi I, Kowalczyk B, Han S, Grzybowski BA, Szleifer I: How and why nanoparticle’s curvature regulates the apparent pKa of buy Sirolimus the coating ligands. J Am Chem Soc 2011, 133:2192–2197.CrossRef 35. Thomas KG, Barazzouk S, Ipe BI, Joseph STS, Kamat PV: Unidirectional plasmon coupling through longitudinal self-assembly of gold nanorods. J Phys Chem B 2004, 108:13066–13068.CrossRef 36. Kalsin AM, Kowalczyk B, Smoukov SK, Klajn R, Grzybowski BA: Ionic-like behavior

of oppositely charged nanoparticles. J Am Chem Soc 2006, 128:15046–15047.CrossRef 37. Sethi M, Joung G, Knecht MR: Stability and electrostatic assembly of Au nanorods for use in biological assays. Langmuir 2009,25(1):317–325.CrossRef 38. Kreibig U, Vollmer M: Optical Properties of Metal Clusters. Heidelberg: Springer; 1995. 39. Lassiter JB, Sobhani H, Fan JA, Kundu J, Capasso F, Nordlander P, Halas NJ: Fano resonances in plasmonic nanoclusters: BMS-907351 geometrical and chemical tunability. Nano Lett 2010, 10:3184–3189.CrossRef 40. Malinsky MD, Kelly KL, Schatz GC, Van Duyne RP: Chain length dependence and sensing

capabilities of the localized surface plasmon resonance of silver nanoparticles chemically modified with alkanethiol self-assembled monolayers. J Am Chem Soc 2001, 123:1471–1482.CrossRef 41. Soreni-Harari M, Yaacobi-Gross N, Steiner D, Aharoni A, Banin U, Millo O, Tessler N: Tuning energetic levels in nanocrystal quantum dots through surface manipulations. Nano Lett 2008, 8:678–684.CrossRef 42. McFarland AD, Van Duyne RP: Single silver nanoparticles as real-time optical sensors with zeptomole sensitivity. Nano Lett 2003, 3:1057–1062.CrossRef 43. Wu Z, Jin R: On the Chlormezanone ligand’s role in the fluorescence of gold nanoclusters. Nano Lett 2010, 10:2568–2573.CrossRef Competing interests The authors declare that they have no competing interests. Authors’ contributions PY conceived and designed all the experiments. Y-RT performed all the experiments and wrote the manuscript. XW, JT, and TH participated in the discussion. All authors read and approved the final manuscript.”
“Background Graphene, a single layer of carbon atoms arranged in a hexagonal network, is a 2D nanostructure with outstanding physical properties [1].

Hygrophorus subgen. Camarophylli (as Camarophyllus) Fr., Summa veg. Scand., Section Post. (Stockholm) 2: 307 (1849). Type species Agaricus camarophyllus Alb. & Schwein., Consp. Fung. Lusat.: 177 (1805) : Fr., [Art. 22.6] ≡ Hygrophorus camarophyllus (Alb. & Schwein. : Fr.) Dumée, Grandjean & L. Maire, Bull. Soc. mycol. Angiogenesis inhibitor Fr. 28: 292 (1912), [= Hygrophorus caprinus (Scop.) Fr. (1838), superfluous to a sanctioned

name, nom. illeg., Art. 13.1]. Hygrophorus subgen. Camarophylli emended here by E. Larss. to exclude A. pratensis and related species now placed in Cuphophyllus. Pileus surface usually dry, gray, grayish blue, buff brown, reddish brown, bistre or fuliginous, or if glutinous then white with yellow floccose-fibrillose veil remnants on the margin; lamellae subdecurrent to decurrent; stipe surface dry, smooth or fibrillose, usually pale gray, grayish blue, buff brown,

bistre or fuliginous, if white glutinous with yellow floccules from veil remnants especially near the apex; lamellar trama divergent giving rise directly JQ1 order to basidia, thus differing from the genus Cuphophyllus. Phylogenetic support Our LSU analysis shows moderately high support (72 % MLBS) for H. chrysodon (subg. Camarophylli) as basal to the rest of the genus Hygrophorus. One ITS analysis (Online Resource 3) shows the same topology while another (Online Resource 9) shows H. chrysodon near the base, both without significant BS support. A four-gene analysis with more species presented by E. Larsson (2010 and unpublished data) also shows subg. Camarophylli as a basal group in Hygrophorus, where it appears as a paraphyletic grade (55 % MPBS for the Resminostat branch separating it from subg. Colorati). Hygrophorus chrysodon and H. camarophyllus appear together in a basal clade in one of our ITS ML analyses (not shown), but H. subviscifer also appears in the clade, and BS support is lacking. Our Supermatrix

analysis places H. chrysodon among sections of subg. Colorati, but without backbone support. Sections included Type section Camarophylli P. Karst., sect. Chrysodontes (Singer) E. Larss., stat. nov. and a new section to accommodate H. inocybiformis, sect. Rimosi E. Larss., sect. nov., are included based on morphology and molecular phylogenies. Comments Agaricus camarophyllus was included by Fries 1821 in his ’subtrib. Camarophylli’ (invalid, Art. 33.9). In 1838, Fries presented this taxon in his’trib. Camarophyllus’ (invalid, Art. 33.9) as Agaricus caprinus Scop., with A. camarophyllus in synonymy. The first valid publication of subgen. Camarophyllus by Fries was in 1849. Fries’ Hygrophorus subg. Camarophylli comprised the type species (H. camarophyllus), H. nemoreus (now placed in Hygrophorus subg. Colorati) and two species of Cuphophyllus (C. pratensis and C. virgineus), so we only retain Fries’ type species.

Terminal Restriction Fragment Length Polymorphism (T-RFLP) and Denaturant Gradient Gel Electrophoresis (DGGE) have been used to describe variations and diversity of the microbiota in the intestinal tract in broilers [8–10]. However, when it comes elucidate the phylogenetic diversity in

the intestinal microbiota at species level, these methods are not sensitive and specific enough. By traditional culture methods only culturable genera are detected, and these are estimated to be about 1% of all genera present in the microbiota [11], whereas DGGE only detects species that represent more than 1% of the total microbiota selleck chemicals llc [12], and in T-RFLP, sequence redundancy at the cleaving side may generate fragments of the same

length from various species. A more comprehensive description of the distribution of species in the microbiota can be done by Sanger sequencing of 16S rDNA libraries. With this method individual species are arranged into Operational Taxonomic Units (OTU) based on > 98% similarity of 16S rDNA sequences [8, 13], but as these methods are very laborious, only the most dominating species are detected. A much deeper investigation of the microbiota has been achieved with the introduction of second generation sequencing technology, such as 454 pyrosequencing, p38 MAPK inhibitor where massive parallel sequencing of short hyper variable regions within the 16S rDNA is performed [14–16]. Using this technology, a 16S rDNA library may be sequenced in one run; generating a large number of sequence reads that allows a much deeper insight in the distribution of species. Although the generated sequences do not cover the whole gene, Huse et al. [17] Flavopiridol (Alvocidib) were able to achieve a 99% correlation of identification, when compared with full

length sequencing of a library from the human microbiota. The microbiota of laying hens experiencing nutritional stress has been investigated by 454 pyrosequencing [5]. In this study, the authors described the changes in the microbiota induced by different molting methods, where hens were given different feed or being starved. By starving the layers, they observed a decrease in species diversity of the caecal microbiota which was not found in hens receiving a diet with high fiber content. With the change to more welfare friendly cage systems, laying hens are now going to be housed in larger groups of 60 birds, rather than 4-6 birds as seen in conventional battery cages. Whether these changes in group size, increased contact between individuals or change in behavior may also have influence on the diversity of the species in the intestinal tract or in the oviduct, have not been investigated.

CRC of patients with Lynch syndrome shows MMR deficiency, defined by the presence of microsatellite instability (MSI) and loss of the MMR protein expression, which is the hallmark of this disorder [3]. The syndrome accounts for 2%–4% of all CRCs and the lifetime risk of developing CRC in the MMR mutation carriers is estimated to be 50%–80% [4, 5]. Therefore, Dorsomorphin nmr patients with LS and their relatives have to undergo intensive surveillance and appropriate management to improve

their survival [6–8]. The most widely used diagnostic strategy for Lynch syndrome is based on selecting patients who fulfil the Amsterdam criteria [2] or any of the Revised Bethesda Guidelines [9], followed by Tumour (Tissue) Testing of MSI and/or immunostaining (IHC) of MMR proteins and germline mutation analysis in MMR deficient cases. The Amsterdam

Criteria allow to select patients on the basis of familial segregation and early age at onset of CRC or other cancer in LS spectrum. The Revised Bethesda Guidelines are less stringent and consider age at onset, presence of synchronous/metachronous cancer (multiple primary cancer), MSI-H phenotype at age < 60 years and familial history of cancer in LS spectrum separately. Both clinical criteria emphasize the importance of early age at onset (≤ 50 years) to suspect LS. Furthermore, recent findings suggest an increasing incidence of CRC in young patients [10–12] as well as the association with advanced stage, prevalent distal location and poor prognosis [10, 13–19]. Therefore, patients with CRC at age ≤ 50 yrs Selleck EX-527 have been considered for LS screening in several studies and the prevalence of LS in early onset-CRC cohorts resulted extremely variable accounting for about 5% to 20% [13, 20–32]. The heterogeneity learn more of the results of these studies is likely due to different methodological approaches, kind of cohort studied and different molecular strategies used for detecting LS. The variability of molecular

strategies reflects that, at present there is considerable uncertainty regarding whether to recommend IHC or MSI or the combination of both as a primary screening tool [33–35]. Some authors found a similar effectiveness of both techniques to screen LS, but consider IHC less complex and suggest to start with it [33]. The recent Jerusalem Workshop [34] recommended to use IHC or MSI alternatively, whereas the last revised NCCN guidelines [35] propose to use a combination of both as testing strategies for LS in high risk subjects. The primary aim of our study was to evaluate the prevalence of Lynch syndrome in a single-center large series of early-onset CRC without family history compared with those with family history of CRC and/or other malignancies of LS spectrum.

By direct contrast the MLVA analysis of 49 isolates belonging to the A.Br.008/009 sub-group revealed a more complex pattern with 14 different MLVA15 genotypes (Nei Diversity Index = 0.143, Figures 1 and 3c). This is a remarkable finding because it indicates that a variety of MLVA genotypes are persisting in

the different soils from which the A.Br.008/009 isolates were recovered. These results are an indication that A.Br.008/009, a major sub-group in Europe and Asia [5], has had an extensive history in China. It is difficult to determine the precise origins of the A.Br.008/009 subgroup (e.g. China versus Europe) at this point because rapidly evolving MLVA markers are subject see more to homoplasy and potentially inaccurate phylogenetic reconstructions. These issues can eventually

be resolved using additional whole genome sequencing and phylogenetic inference to more accurately predict the origins of the R788 in vitro A.Br.008/009 sub-group. The Ames sub-lineage appears to have descended from the A.Br.001/002 sub-group, a sub-group that has 106 isolates in our worldwide collection [5]. Seventy-four of these accessions were isolated from outbreaks in China and the remaining 32 isolates were recovered in the UK, other parts of Europe, North America and other parts of Asia. The large number of MLVA15 genotypes (n = 32) among the 74 Chinese isolates and a wide distribution throughout the Country indicates that the A.Br.001/002 sub-group is a major part of the B. anthracis population structure in this region (Figure 5a). This sub-group also appears to be basal to the Ames sub-lineage, indicating that 8 isolates from China and 11 isolates from Texas may share common ancestors that originated in China (Figure 5b and [10]). How then did the Ames lineage come to Texas and why is this lineage not found in Europe? This is still not known and subject to considerable speculation. By several accounts, it is believed that anthrax was introduced into the Gulf Coast States (Louisiana and Texas) by early settlers from Europe. Stein

[14, 15] indicates that the first recorded episodes of anthrax in livestock in Louisiana Cell press occurred in 1835, 1851 and 1884; and in Texas in 1860 and 1880. By 1916, when a first national survey was conducted to obtain nation-wide information on the incidence of anthrax, Texas already had 41 counties reporting infections. A composite of outbreaks compiled after the 4th National Survey by the U.S. Department of Agriculture between 1916–1944 (Figure 6) indicates three major outbreak pockets: one in California, one in the Dakotas/Nebraska and the third along the coastal regions of Texas and Louisiana [15]. Figure 6 Historical Anthrax Incidences between 1915–1944 in Texas/Louisiana and The Dakotas/Nebraska/Iowa. Adapted from Stein (1945, [15]). Darker colors represent severe outbreaks and the lighter colors represent sporadic outbreaks.