(XLS 149 KB) Additional file 2: Full list and taxonomy of OTUs cl

(XLS 149 KB) Additional file 2: Full list and taxonomy of OTUs clustered at 6% difference in descending order of their relative abundance (%). This is an Excel file listing all 517 OTUs, abundance and the taxonomic assignment of each OTU per individual S1, Selleck EPZ5676 S2 and S3. (XLS 116 KB) Additional file 3: Full

list and taxonomy of OTUs clustered at 10% difference in descending order of their relative abundance (%). This is an Excel file listing all 320 OTUs, abundance and the taxonomic assignment of each OTU per individual S1, S2 and S3. (XLS 94 KB) Additional file 4: Full list and relative abundance of higher taxa per individual microbiome. This is an Excel file listing all 112 higher taxa (genera or more inclusive taxa when sequences could not be confidently classified to the genus level) and their relative abundance in oral microbiomes of three individuals: S1, S2 and S3. (XLS 42 KB) Additional file 5: Relative abundance of 1660 unique sequences that were shared by three individuals (S1, S2 and S3). This Excel file lists Alpelisib datasheet the taxonomy of the sequences shared by three individuals, ranked by the abundance of these sequences in the total data set. The sequences are available at the Short Read Archive

of NCBI as SRP000913. (XLS 3 MB) Additional file 6: Full list and YM155 purchase absolute abundance of higher taxa per individual sampling site. This is an Excel file listing all 112 higher taxa (genera or

more inclusive taxa when sequences could not be confidently classified to the genus level) and their abundance in 29 samples from three individuals: S1, S2 and S3. Janus kinase (JAK) Data were not normalized. (XLS 54 KB) Additional file 7: Full list of taxa and PCA loadings. This is an Excel file listing the loadings of the first three components of the Principal Component Analysis (PCA) on all 818 OTUs (3% genetic difference) and all 29 samples (the corresponding PCA plots are shown in Figure 7). The loadings marked in bold and highlighted are above the arbitrary significance threshold of 1 or -1. The positive values are highlighted yellow; the negative values are highlighted turquoise. (XLS 128 KB) References 1. Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI: A core gut microbiome in obese and lean twins. Nature 2009, 457:480–484.CrossRefPubMed 2. Wilson M: Bacteriology of Humans: An Ecological Perspective. Malden, MA: Blackwell Publishing Ltd 2008. 3. Voelkerding KV, Dames SA, Durtschi JD: Next-generation sequencing: from basic research to diagnostics. Clin Chem 2009, 55:641–658.CrossRefPubMed 4. Keijser BJF, Zaura E, Huse SM, van der Vossen JMBM, Schuren FHJ, Montijn RC, ten Cate JM, Crielaard W: Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 2008, 87:1016–1020.CrossRefPubMed 5.

The charge–discharge curves of the α-Fe2O3 NP (shown in Figure 1b

The charge–discharge curves of the α-Fe2O3 NP (shown in Figure 1b) electrode during the first and second cycles are shown in Figure 7b. In Adriamycin order the first discharge curve, there was a weak potential slope located at 1.2 to 1.0 V and an obvious potential plateau at 0.9 to 0.8 V. The

capacity obtained above 0.8 V was 780 mAh·g−1 (4.6 mol of Li per mole of α-Fe2O3). After discharging to 0.01 V, the total specific capacity of the as-prepared α-Fe2O3 reached 887 mAh·g−1, corresponding to 5.3 mol of Li per mole of α-Fe2O3. During the second cycle, the discharge curve only showed a slope at 1.0 to 0.8 V, and the capacity was reduced to 824 mAh·g−1. Usually, the slope behavior during the discharge process of metal oxide anode materials was considered to be related with the learn more irreversible formation of a nanocomposite of crystalline grains of metals and amorphous Li2O matrix. The comparison of the rate as well as cycling performances between Fe2O3 NPs and nanoarchitectures were also conducted, which were obtained by a 12.0-h hydrothermal treatment at 150°C with a molar ratio of FeCl3/H3BO3/NaOH as 2:0:4 (Figure 1b) and 2:3:4 (Figure 2e), respectively. The discharge and charge capacities in the first cycle at a current of 0.1 C were 1,129 and 887 mAh·g−1 for

Fe2O3 NPs (Figure 7c) and 1,155 and 827 mAh·g−1 for Fe2O3 nanoarchitectures. Ku 0059436 For the second cycle, the discharge and charge capacities were 871 and 824 mAh·g−1 for Fe2O3 NPs and 799 and 795 mAh·g−1 for Fe2O3 nanoarchitectures. The Li-ion storage

capacitance of the current Fe2O3 NPs/nanoarchitectures reported in this work is higher than that of hematite nanorod (ca. 400 mAh·g−1 at 0.1 C) [68], nanoflakes Phospholipase D1 [69], hierarchial mesoporous hematite (ca. 700 mAh·g−1 at 0.1 C) [65], hollow nanospindles (457 mAh·g−1 at 0.2 mA cm−2) [37], hollow microspheres (621 mAh·g−1 at 0.2 mA cm−2) [37], and dendrites (670 mAh·g−1 at 1 mA cm−2) [70]. When the current increased, both the discharge and charge capacities decreased, especially for Fe2O3 NPs (Figure 7c,e). The discharge and charge capacities of Fe2O3 nanoarchitectures were larger than those of Fe2O3 NPs. For instance, when the current rate increased to 2.0 C, the charge and discharge capacities of Fe2O3 nanoarchitectures were 253 and 247 mAh·g−1, while those of Fe2O3 NPs were only 24 and 21 mAh·g−1. This indicated that the Fe2O3 nanoarchitectures presented much improved rate performance for the reason that the porous nature of Fe2O3 nanoarchitectures allow a fast Li-ion diffusion by offering better electrolyte accessibility and also accommodate the volume change of NPs during Li insertion/extraction. However, similar to many Fe2O3 nanostructures reported in literatures, the α-Fe2O3 nanoarchitectures exhibited a rapid capacity fading within the potential range of 0.01 to 3.

J Gastrointest Surg 2010,14(10):1619–1628 PubMedCrossRef 84 Malv

J Gastrointest Surg 2010,14(10):1619–1628.PubMedCrossRef 84. Malvasi A, Tinelli A, Farine D, et al.: Effects of visceral peritoneal closure on scar formation at cesarean delivery. Int J Gynecol Obstet 2009, 105:131–135.CrossRef 85. Adhesion Barrier Study Group: Prevention of postsurgical adhesions

by INTERCEED(TC7), an absorbable adhesion barrier: a prospective c-Met inhibitor randomized multicenter clinical study. INTERCEED(TC7). Fertil Steril 1989,51(6):933–938. CX-4945 86. Saravelos H, Li TC: Post-operative adhesions after laparoscopic electrosurgical treatment for polycystic ovarian syndrome with the application of Interceed to one ovary: a prospective randomized controlled study. Hum Reprod 1996,11(5):992–997.PubMedCrossRef

87. Azziz R, Adhesion Barrier Study Group: Microsurgery alone or with INTERCEED absorbable adhesion barrier for pelvic sidewall adhesion re-formation: The INTERCEED (TC7). II. Surg Gynecol Obstet 1993, 177:135–139.PubMed 88. Nordic Adhesion Prevention Study Group: The efficacy of Interceed (TC7)* for prevention of reformation of postoperative adhesions on ovaries, fallopian tubes, and fimbriae in microsurgical selleckchem operations for fertility: a multicenter study. Fertil Steril 1995, 63:709–714. 89. Wiseman DM, Trout JR, Franklin RR, et al.: Metaanalysis of the safety and efficacy of an adhesion barrier (Interceed TC7) in laparotomy. J Reprod Med 1999, 44:325–331.PubMed 90. Ahmad G, Duffy JM, Farquhar C, et al.: Barrier agents for adhesion prevention after gynaecological surgery. Cochrane Database Syst Rev 2008, 16:CD000475. 91. Montz FJ, Monk BJ, Lacy SM: The gore-Tex surgical membrane: effectiveness

as a barrier to inhibit postradical pelvic surgery adhesions in a porcine model. Gynecol Oncol 1992, 45:290–293.PubMedCrossRef 92. Beck DE, Cohen Z, Fleshman JW, et al.: A prospective, randomized, multicenter, controlled study of the safety of Seprafilm adhesion Dichloromethane dehalogenase barrier in abdominopelvic surgery of the intestine. Dis Colon Rectum 2003, 46:1310–1319.PubMedCrossRef 93. Becker M, Dayton MT, Fazio VW, et al.: Prevention of postoperative abdominal adhesions by a sodium hyaluronate-based bioresorbable membrane: a prospective, randomized, double-blind multicenter study. J Am Coll Surg 1996, 183:297–306.PubMed 94. Vrijland WW, Tseng LN, Eijkman HJ, et al.: Fewer intraperitoneal adhesions with use of hyaluronic acid-carboxymethylcellulose membrane: a randomized clinical trial. Ann Surg 2002, 235:193–199.PubMedCrossRef 95. Cohen Z, Senagore AJ, Dayton MT, et al.: Prevention of postoperative abdominal adhesions by a novel, glycerol/sodium hyaluronate/carboxymethylcellulose-based bioresorbable membrane: a prospective, randomized, evaluator-blinded multicenter study. Dis Colon Rectum 2005, 48:1130–1139.PubMedCrossRef 96.

While the accuracy of symptom

recall over a relatively lo

While the accuracy of symptom

recall over a relatively long period of time (6 months to 4 years) is a potential concern, the angina-related impact on QoL was such that most patients felt comfortable assessing their symptoms; those who could not accurately recall or assess their symptoms were not recruited to the study. In addition, there was no difference in the results between those with 6 months’ experience and those with 4 years’ worth, which suggests that patient recall was reliable in this case. It should also be noted the use of the PGIC scale versus other validated scales for angina severity and QoL is an additional limitation; however, the SAQ was not included in this survey due to limitations associated with its length. 5 Conclusion Patients with chronic angina maintaining treatment with Selleck Salubrinal ranolazine over time, with treatment durations ranging from <6 months to >4 years, reported substantial reductions in the severity and frequency of angina attacks,

reductions in the impact of angina on daily activities, and improvements in QoL. These observations correspond to key treatment goals established by ACC/AHA guidelines for patients with stable ischemic heart disease. Acknowledgments Funding for the patient survey was selleck inhibitor provided by Gilead Sciences, Inc. Luana Atherly, PhD, Scarlett Geunes-Boyer, PhD, and Sushma Soni of inScience Communications, Springer Healthcare, provided Neratinib medical Selleck Seliciclib writing support which was

funded by Gilead Sciences, Inc. Conflict of interest Dr. Grehan is currently a Gilead employee and owns Gilead stock and options. Dr. Muhlestein has received <$2,000 dollars honorarium for consulting fees from Gilead Sciences, Inc. Open AccessThis article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. References 1. Go AS, Mozaffarian D, Roger VL, et al. Heart disease and stroke statistics—2013 update: a report from the American Heart Association. Circulation. 2013;127(1):e6–245.PubMedCrossRef 2. Brorsson B, Bernstein SJ, Brook RH, Werko L, for the SECOR/SBU Project Group. Quality of life of patients with chronic stable angina before and four years after coronary revascularisation compared with a normal population. Heart. 2002;87(2):140–5.PubMedCrossRef 3. Pragodpol P, Ryan C. Critical review of factors predicting health-related quality of life in newly diagnosed coronary artery disease patients. J Cardiovasc Nurs. 2013;28(3):277–84.PubMedCrossRef 4. Javitz HS, Ward MM, Watson JB, Jaana M. Cost of illness of chronic angina. Am J Manag Care. 2004;10(11 Suppl.):S358–69.PubMed 5. Beltrame JF, Weekes AJ, Morgan C, Tavella R, Spertus JA.

CrossRef 4 Dulloo A, Duret C, Rohrer D, Girardier L, Mensi N, Fa

CrossRef 4. Dulloo A, Duret C, Rohrer D, Girardier L, Mensi N, Fathi M, Chantre P, Vandermander J: Efficacy of a green tea extract rich in catechin polyphenols and caffeine in increasing 24-h energy expenditure and fat oxidation in humans. Am J Clin Nutr 2000, 70:1040–1045. 5. Rudelle S, Ferruzzi MG, Cristiani I, Moulin J, Mace K, Acheson K, Tappy L: Effects of a thermogenic beverage on 24-hour energy metabolism in humans. Obesity 2007, 15:349–355.PubMedCrossRef 6. Acheson KJ, Zahorska-Markiewicz B, Anantharaman K, Jequier E: Caffeine and coffee: their influence

on metabolic rate and substrate utilization in normal weight and obese individuals. Am J Clin Nutr 1980, 33:989–997.PubMed 7. Dulloo AG, Geissler CA, Horton T, Collins A, Miller DS: Normal caffeine consumption: influence on thermogenesis and daily energy expenditure Cyclosporin A in vitro in lean and postobese human volunteers. Am J Clin Nutr 1989, 49:44–50.PubMed 8. Diepvens K, Westerterp CP-868596 clinical trial KR, Westerterp-Plantenga MS: Obesity and thermogenesis related to the consumption of caffeine, ephedrine, capsaicin, and green tea. Am J Physiol 2007, 292:77–85. 9. Nagao T, Hase T, Tokimitsu I: A green tea extract high in catechins reduces

body fat and cardiovascular risk in humans. Obesity 2007, 15:1473–1483.PubMedCrossRef 10. Westerterp-Plantenga MS: Green tea catechins, caffeine, and body-weight regulation. Physiol Behav 2010, 100:42–46.PubMedCrossRef 11. Lockwood CM, Moon JR, Smith AE, Tobkin SE, Kendall KL, Graef JL, Cramer JT, Stout JR: Low-Calorie

energy drink improves NSC 683864 order physiological response to exercise in previously sedentary men: a placebo-controlled efficacy and safety study. J Strength Cond Res 2010, 24:2227–2238.PubMedCrossRef 12. Smith AE, Lockwood CM, Moon JR, Kendall KL, Fukuda DH, Tobkin SE, Cramer JT, Stout JR: Physiological effects of caffeine, epigallocatechin-3-gallate, and exercise in overweight and obese women. Appl Physiol Nutr Metab 2010, 35:607–616.PubMedCrossRef 13. Mitchell ES, Suplatast tosilate Slettenaar M, Meer v, Transler C, Jans L, Quadt F, Berry M: Differential contributions of theobromine and caffeine on mood psychomotor performance and blood pressure. Physiol Behav 2011, 104:816–822.PubMedCrossRef 14. Giesbrecht T, Rycroft JA, Rowson MJ, De Bruin EA: The combination of l-theanine and caffeine improves cognitive performance and increases subjective alertness. Nutr Neurosci 2010, 13:283–290.PubMedCrossRef 15. Bruce M, Scott N, Lader M, Marks V: The psychopharmacological and electrophysiological effects of single doses of caffeine in healthy human subjects. Br J Clin Pharmacol 1986, 22:81–87.PubMedCrossRef 16. Hoffman JR, Kang J, Ratamess NA, Rashti SL, Tranchina CP, Faigenbaum AD: Thermogenic effect of an acute ingestion of a weight loss supplement. Journal of the International Society of Sports Nutrition 2009, 6:1.PubMedCrossRef 17.

NDEA-treated samples exhibited allover higher oxidant/antioxidant

NDEA-treated samples exhibited allover higher oxidant/antioxidant status than control and NDEA+Q samples. Quercetin (NDEA+Q) succeeded in most cases to normalize the oxidant/antioxidant status of NDEA-treated samples. Moreover, histopathological www.selleckchem.com/products/chir-98014.html confirmation showed normal liver histology of the NDEA+Q samples. Our results are agreeable with Lijinsky [4] and Bogovski and Bogovski, [7] who reported that NDEA is known as precarcinogen capable of inducing tumors in different animal species and are suspected of being involved in some human tumors [7]. Confirming results reported that administration of NDEA to rats resulted in lipid peroxidation (represented

in higher MDA levels) and enhanced Adriamycin concentration chemiluminescence in liver preneoplastic nodules, indicating the formation of activated oxygen species [27]. NDEA also produces 8-hydroxyguanine (8-OHG) [28], an indicator of oxidative damage to DNA (P 53 results) and the most abundant of more than 20 types of modifications produced under conditions of oxidative stress. This premutagenic DNA damage results in specific types of mutations and is likely to be involved in carcinogenesis. In contrast, Andrzejewski et al. [8] postulated that NDEA is an epigenetic

chemical compound. The antitumor effects of plant flavonoids have been reported to induce cell growth inhibition and apoptosis in a variety of cancer cells [9]. Quercetin, a ubiquitous bioactive flavonoid, why can inhibit the proliferation of cancer cells [10, 11]. It has been shown that quercetin treatment caused cell cycle Selleckchem Ku 0059436 arrests such as G2/M arrest or G1 arrest in different cell types [10, 29]. Moreover, quercetin-mediated apoptosis may result from the induction of stress proteins, disruption of microtubules and mitochondrial, release of cytochrome

c, and activation of caspases [11, 30]. Granado-Serrano et al. [31] reported that quercetin may be a potential chemopreventive or therapeutic agent in hepatocarcinoma cells and further efforts to investigate these possibilities are needed. Specific P 53 gene PCR results may be contributed to the quercetin-mediated down regulation of mutant P 53 as reported by Avila et al. [32]. Contradictory results were reported by Chaumontet et al. [33] who reported the lack of tumor-promoting effects of the flavonoids. The oxidant/antioxidant status of liver samples illustrated that quercetin exerted its preventive effect through inhibition of lipid peroxidation to prevent oxidative DNA damage [28]. Consequently, the levels of GSH (a key player in reduction and detoxification processes) [17], GR (reduces GSSG to GSH which is an important cellular antioxidant) [18, 19] and GPX (whose main biological role is to protect the organism from oxidative damage) [18, 19] decreased significantly in NDEA+Q group.

Comparison of MST and UPGMA The geographic dependency found in UP

Comparison of MST and UPGMA The geographic dependency found in UPGMAs but not in MSTs could be explained by the different approaches of sequence-based versus allelic profile-based comparison. Sequences with fewer differences are grouped close together in the UPGMA whereas in MSTs all sequences which differ in at least one nucleotide have the same distance to each

selleck inhibitor other. Thus the UPGMA seems to be more suitable for showing geographical relationships between strains of highly diverse populations. The CCs identified by goeBURST were grouped together also in UPGMA analysis. Similarly Yan et al. observed the grouping of CCs identified by eBURST in high monophyletic clades of UPGMA analysis [15]. Conclusions The generated data reveal a high genetic diversity

for all V. parahaemolyticus strain subsets analyzed, with a high proportion of new alleles and STs discovered, typical for environmental strain collections. Clusters of strains on nucleotide level contained mainly strains originating from one continent, but no exclusive clusters for the YH25448 cost distinct continents were identified. STs and pSTs were either supra-regionally distributed or exclusively present in one region. Using AA-MLST instead of MLST in the goeBURST analysis allowed reliable identification of closely related strains (pSTs were SLVs), independent of their geographic origin. In contrast the application of MLST is more useful to recognize relationships in an epidemiological context by creating distinct CCs. In general selleck chemicals pubMLST database reflects only the diversity of so far analyzed strains, and may not represent the natural diversity of the V. parahaemolyticus population as also indicated by our rarefaction analysis. Further analysis of strains of diverse origins may help to complete the database and to keep pace with new evolving genotypes. Availability of supporting data The data sets and additional figures supporting the results of this article are included in Additional files 1, 2, 3, 4 and 5. Acknowledgements We acknowledge Kathrin Oeleker for assistance in performing PCR and strain cultivation. The until project was funded by

the German Ministry of Education and Research (BMBF) within the VibrioNet project. Electronic supplementary material Additional file 1: Table S1: Characteristics and allelic profiles of V. parahaemolyticus strains included within this study. (PDF 151 KB) Additional file 2: Tables S2: AA-MLST profiles and properties of each allele on peptide level (numbers, sequences and frequencies). (XLSX 42 KB) Additional file 3: Figure S1: Population snapshot based on MLST profiles of pubMLST dataset. Coloring depends on geographical origin of isolates: Asia (red), South America (light green), North America (dark green), Africa (yellow) and Europe (blue). Size of circles represents number of isolates with the corresponding ST. STs that differ in one allele are connected via black lines.

47 Buck DL, Vester-Andersen M, Moller MH: Danish clinical regist

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Eur J Surg 1999, 165:209–214. 49. Katkhouda N, Maver E, Mason R: Laparoscpic repair of perforated duodenal ulcers. Outcome and efficacy in 30 consecutive patients. Arch Surg 1999, 134:845–850.PubMed 50. Sanabria A, Morales CH, Villegas M: Laparoscopic repair for perforated peptic ulcer disease. Cochrane Database Syst Rev 2005., 4: CD004778 51. Lau WY, Leung KL, Zhu XL, Lam YH, Chung SC, Li AK: laparoscopic repair of perforated peptic ulcer. Br J Surg 1995, 82:814–816.PubMed 52. Lunevicius R, Morkevicius M: Comparison of laparoscopic versus open repair for perforated duodenal ulcers. Surg Endosc 2005, 19:1565–1571.PubMed 53. Bhogal RH, Athwal R, Durkin D, Deakin M, Cheruvu CN: Comparison Between open and laparoscopic repair of perforated peptic

ulcer disease. World J Surg 2008, 32:2371–2374.PubMed 54. Kirshtein B, Byrne M, Mayer T, Lantsberg L, Avinoach E, Mizrahi S: Laparoscopic treatment og gastroduodenal peforations: comparison with conventional surgery. Surg Endosc 2005, 19:1487–1490.PubMed 55. Jm N, Edwin B, Reiertsen O, Trondsen E, Faerden AE, Rosseland AR: Laparoscopic and open operation in patients with perforated peptic ulcer. Eur J Surg 1999, Akt inhibitor 165:209–214. 56. Gurtner GC, Robertson CS, Chung SC, Ling TK, Ip SM, Li AK: Effect of carbon dioxide pneumoperitoneum on bacteraemia and endotoxaemia in an animal model of peritonitis. Br J Surg 1995, 82:844–848.PubMed 57. Evasovich MR, Clark TC, Horattas MC, Holda S, Treen L: Does pneumoperitoneum during laparoscopy increase bacterial translocation? Surg. Endosc 1996, 10:1176–1179. 58. Robertson GS, Wemyss-Holden SA, Maddern GJ: Laparoscopic repair of perforated duodenal ulcers. The role of laparoscopy in generalised peritonitis. Ann R Coll Surg Engl 2000, 82:6–10.PubMedCentralPubMed 59. Urbano

D, Rossi M, De Simone P, Berloco P, Alfani D, Cortesini R: Alternative laparoscopic management of perforated peptic ulcers. Surg Endosc 1994, 8:1208–1211.PubMed 60. Sanabria A, Villegas MI, Morales DOK2 Uribe CH: Laparoscopic repair for perforated peptic ulcer disease. Cochrane Database Syst Rev 2013, 2:CD004778. doi:10.1002/14651858.CD004778.pub3PubMed 61. Guadagni S, Serine/CaMK inhibitor Cengeli I, Galatioto C, Furbetta N, Piero VL, Zocco G, Seccia M: Laparoscopic repair of perforated peptic ulcer: single-center result. Surg Endosc 2014,28(8):2302–2308. doi:10.1007/s00464–014–3481–2. Epub 2014 Mar 8.PubMed 62. Byrge N, Barton RG, Ennis TM, Nirula R: Laparoscopic versus open repair of perforated gastroduodenal ulcer: a Nationl Surgical Quality Improvement Program analysis. Am J Surg Dec 2013,206(6):957–962. discussion 962–3. doi:10.1016/j.amjsurg.2013.08.014. Epub 2013 Oct 8 63.

Emerg Infect Dis 1999,5(3):336–345 PubMedCrossRef 2 Uehara Y, Na

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The results presented here indicate that the disassembly is also

The results presented here indicate that the disassembly is also performed in

a defined order. The loss of flagellar motility at low pH could already be shown for the closely related Rhizobium leguminosarum bv.viciae and A. tumefaciens [50, 58], whereas the more distantly related enterobacteria E. coli and Salmonella enterica serovar Thyphimurium showed an opposite response [59–61]. For cases of induced motility it was argued that at low pH the large ΔpH drives flagellar rotation [62]. Since there are also reports of E coli where it could be demonstrated that motility is lost at low pH [63] the picture is ambiguous. A turndown of the flagellar motility genes of S. AZD3965 nmr meliloti was also observed for other stresses like osmotic stress selleck screening library [14, 64], heat shock and nutrient starvation [31]. It is therefore apparent that this response is a general stress response of S. meliloti 1021 and not an answer specific for pH stress. Since cell motility is very energy consumptive, the repression of the 3-deazaneplanocin A in vitro motility genes is likely to save energy which is needed to face the low pH e.g. by enhancing the EPS I biosynthesis. Figure 5 Map of genes of the flagellar biosynthesis region on the chromosome of S. meliloti 1021 and their expression in response to acidic pH. A part of the flagellar gene region is schematically

displayed with its genes given by open arrows coloured according to the K-means cluster distribution. Gene names are given below. Black arrows indicate known operon structures.

The graph above shows on the Y-axis the time after pH-shift and on the Z-axis for each time point the expression of the corresponding genes by the M-value. For clarity a region of 13 consecutive genes of the flagellar operon (flgA – fliK) has been omitted. The location of the omitted region is indicated by the orthogonal lines. The ending of a flagellar operon within the omitted region is depicted by a dotted black arrow. Conclusion This Selleck Ponatinib study demonstrates the complexity of the cellular response of S. meliloti to adapt to a new environmental conditions. The mechanism of the cell to face the low pH is a mixture of several distinct reactions which follow a particular order in time. By applying K-means clustering analysis the diversity of different responses of individual genes was reduced to 8 main expression profiles. By this method a reasonable distinction between differently behaving up-regulated and down-regulated genes could be performed. Furthermore, within the obtained clusters, groups of genes with functional relationship were often joined together. Additionally, this analysis revealed that within the first 20 minutes after the shift to acidic pH the cell appears to perform the main changes necessary to adapt to the new environmental circumstances on the transcriptional level. The immediate response of S.